Make on-disk index representation separate from in-core one

This converts the index explicitly on read and write to its on-disk
format, allowing the in-core format to contain more flags, and be
simpler.

In particular, the in-core format is now host-endian (as opposed to the
on-disk one that is network endian in order to be able to be shared
across machines) and as a result we can dispense with all the
htonl/ntohl on accesses to the cache_entry fields.

This will make it easier to make use of various temporary flags that do
not exist in the on-disk format.

Signed-off-by: Linus Torvalds <torvalds@linux-foundation.org>

merge-recursive.c

@@ -333,7 +333,7 @@ static struct path_list *get_unmerged(void)
 			item->util = xcalloc(1, sizeof(struct stage_data));
 		}
 		e = item->util;
-		e->stages[ce_stage(ce)].mode = ntohl(ce->ce_mode);
+		e->stages[ce_stage(ce)].mode = ce->ce_mode;
 		hashcpy(e->stages[ce_stage(ce)].sha, ce->sha1);
 	}